The Lomakin Lab
Funding opportunities, conferences, lectures & trainings:
grants.at - Austrian Database for Scholarships and Research Grants
EMBO events - European Molecular Biology Organization Conferences, Lectures and Trainings
FEBS events calendar - Meetings, Courses and Webinars supported by the Federation of the European Biochemical Societies
EMBL-EBI training - EMBL's European Bioinformatics Institute Training Courses
ASCB - American Society for Cell Biology, AN INTERNATIONAL FORUM FOR CELL BIOLOGY
MBL Woods Hole/UChicago Education - Advanced Research Training Courses offered by the Marine Biological Laboratory Woods Hole/UChicago
Cellular bioinformatics resources:
BioNumbers - Cell Biology by the Numbers - The database of useful biological numbers
Cellosaurus - Knowledge resource on cell lines hosted by the Swiss Institute of Bioinformatics - ExPASy
Mitocheck - HeLa Kyoto genome-wide gene knockdown phenotype database
Cellular Phenotype Database - EMBL-EBI cellular phenotype database providing access to phenotypic data derived from high-throughput screenings
HeLa Proteome - HeLa Kyoto Proteome Database @ Hyman Lab, Max Planck Institute of Molecular Cell Biology and Genetics
Allen Cell DATA - Allen Institute for Cell Science systematic data archive
Human Protein Atlas - Open access resource for human proteins
JUMP-CP - BROAD Institute Joint Undertaking in Morphological Profiling-Cell Painting Consortium
CellMiner - National Cancer Institute NCI-60 cancerous cell lines integrative database
Cellpose - Deep learning-based segmentation tool for cellular bioimage informatics
Molecular -omics tools:
g:Profiler - Interoperable web service for functional enrichment analysis and gene identifier mapping
webgestalt - WEB-based GEne SeT AnaLysis Toolkit
ARCHS4 - Massive Mining of Publicly Available RNA-seq Data from Human and Mouse
STRING - Protein-Protein Interaction Networks & Functional Enrichment Analysis
MetaboAnalyst - Web-based platform for comprehensive metabolomics data analysis, interpretation, and integration with other omics data
Guide to Metabolomics Analysis - Bioinformatics Workflow
cAMP - Cancer Atlas of Metabolic Profiles
Cancer cell pharmacobiology resources:
RCCL Resistant Cancer Cell Line Collection - Resource for the studying of acquired drug resistance in cancer
Genomics of Drug Sensitivity in Cancer - Resource for therapeutic biomarker discovery in cancer cells
Cancer cell genomics resources:
cBioPortal - Explore and Analyze Multimodal Cancer Data
DepMap Portal - BROAD Institute Resource for systematic data analyses of cancer vulnerabilities across all tumors
A data scientist's guide & some useful AI-based tools :
(Biomedical) Data Science Guide - A Data Scientist's Guide to a Comprehensive Setup
Google Colaboratory - Colab
Google Gemini - Gemini AI tool
310.ai AI operating systems for life sciences - 310.ai COPILOT
Data analysis & visualization:
PlotsOfData - Web app for visualizing data together with their summaries
T test calculator - GraphPad online T test calculating tool
Scientific illustrations:
Illustrate - Non-photorealistic Biomolecular Illustration
Bioicons - Library of free open source icons for science illustrations in biology and chemistry
Servier Medical Art - Library of free medical images
BioRender - Create Professional Science Figures in Minutes
PhyloPic - Free silhouette images of animals, plants, and other life forms
Poppy - Free & Open Source Online Image Morphing
Scientific writing:
bioRxiv template - HenriquesLab bioRxiv template
Bookshelf - extracurricular reading:
Evolutionary Medicine - Stephen C. Stearns & Ruslan Medzhitov, Oxford University Press
Medical University of Vienna
Center for Pathobiochemistry and Genetics
